Genome Meta Information: Agrobacterium tumefaciens Sta002 (GCA_025560305.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025560305.1 | ||
| HOMD Taxon-ID | HMT-485 | ||
| Species Name (in use by HOMD) | Agrobacterium tumefaciens | ||
| Organism Name (as deposited) | HMT-485 Agrobacterium tumefaciens Sta002 | ||
| Strain or Isolate | Sta002 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium; s__Agrobacterium tumefaciens |
||
| Sequencing Technology | oxford Nanopore GridION;Illumina Miseq | ||
| Genome Coverage | 180.6x | ||
| Contigs |
|
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| Total Sequence Length | 5,831,233 (bp) | ||
| GC Percentage | 59.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/560/305/GCA_025560305.1_ASM2556030v1 | ||
| CDS | 5472 | ||
| Genes | 5605 | ||
| mRNA | 5605 | ||
| misc RNA | 60 | ||
| rRNA | 12 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.6 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.28 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.95 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2556030v1 |
| GenBank Assembly Accession | GCA_025560305.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025560305.1 [NCBI] |
| BioSample | SAMN12610089 [NCBI] |
| BioProject | PRJNA561159 [NCBI] |
| Submitter | USDA-ARS |
| Submission Date | 2019-08-20T13:50:04.647 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 358 |
| Isolation Source | |
| Geo Location | USA: California |
