Genome Meta Information: Treponema denticola KCOM 3500 (GCA_025905525.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025905525.1 | ||
| HOMD Taxon-ID | HMT-0584 | ||
| Species Name (in use by HOMD) | Treponema denticola | ||
| Organism Name (as deposited) | HMT-584 Treponema denticola KCOM 3500 | ||
| Strain or Isolate | KCOM 3500 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B; s__Treponema_B denticola |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 259.4 | ||
| Contigs |
|
||
| Total Sequence Length | 2,778,422 (bp) | ||
| GC Percentage | 38.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/905/525/GCA_025905525.1_ASM2590552v1 | ||
| CDS | 2529 | ||
| Genes | 2590 | ||
| mRNA | 2590 | ||
| misc RNA | 10 | ||
| rRNA | 6 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.29 % | ||
| CheckM Completeness | 98.99 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2590552v1 |
| GenBank Assembly Accession | GCA_025905525.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025905525.1 [NCBI] |
| BioSample | SAMN31203232 [NCBI] |
| BioProject | PRJNA887932 [NCBI] |
| Submitter | Chosun University |
| Submission Date | 2022-10-07T03:54:04.023 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 158 |
| Isolation Source | subgingival plaque of chronic periodontitis lesion |
| Geo Location | South Korea: Gwangju |
