Genome Meta Information: Capnocytophaga ochracea KCOM 28121 (GCA_026013825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026013825.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea KCOM 28121 | ||
| Strain or Isolate | KCOM 28121 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | PacBio RSII; Illumina HiSeq | ||
| Genome Coverage | 883 | ||
| Contigs |
|
||
| Total Sequence Length | 2,807,434 (bp) | ||
| GC Percentage | 39.3 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/013/825/GCA_026013825.1_ASM2601382v1 | ||
| CDS | 2379 | ||
| Genes | 2448 | ||
| mRNA | 2448 | ||
| misc RNA | 9 | ||
| rRNA | 12 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.38 % | ||
| CheckM Completeness | 94.4 % | ||
| CheckM Contamination | 3.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2601382v1 |
| GenBank Assembly Accession | GCA_026013825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026013825.1 [NCBI] |
| BioSample | SAMN31474502 [NCBI] |
| BioProject | PRJNA894799 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2022-10-27T02:21:01.660 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1018 |
| Isolation Source | Actinomycosis |
| Geo Location | South Korea: Gwangju |
