Genome Meta Information: Veillonella rogosae KCOM 3468 (GCA_026057735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026057735.1 | ||
| HOMD Taxon-ID | HMT-0158 | ||
| Species Name (in use by HOMD) | Veillonella rogosae | ||
| Organism Name (as deposited) | HMT-158 Veillonella rogosae KCOM 3468 | ||
| Strain or Isolate | KCOM 3468 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella rogosae |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 436.7 | ||
| Contigs |
|
||
| Total Sequence Length | 2,205,714 (bp) | ||
| GC Percentage | 38.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/057/735/GCA_026057735.1_ASM2605773v1 | ||
| CDS | 1999 | ||
| Genes | 2090 | ||
| mRNA | 2090 | ||
| misc RNA | 30 | ||
| rRNA | 12 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.97 % | ||
| CheckM Completeness | 99.7 % | ||
| CheckM Contamination | 0.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2605773v1 |
| GenBank Assembly Accession | GCA_026057735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026057735.1 [NCBI] |
| BioSample | SAMN31432570 [NCBI] |
| BioProject | PRJNA893812 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2022-10-24T22:16:03.513 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 423477 |
| Isolation Source | subgingival plaque of chronic periodontitis lesion |
| Geo Location | South Korea: Gwangju |
