Genome Meta Information: Staphylococcus lugdunensis RMLUG3 (GCA_026427475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026427475.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis RMLUG3 | ||
| Strain or Isolate | RMLUG3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina NovaSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 541.1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,593,363 (bp) | ||
| GC Percentage | 33.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/427/475/GCA_026427475.1_ASM2642747v1 | ||
| CDS | 2405 | ||
| Genes | 2571 | ||
| mRNA | 2571 | ||
| misc RNA | 88 | ||
| rRNA | 16 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.44 % | ||
| CheckM Completeness | 97.69 % | ||
| CheckM Contamination | 0.55 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2642747v1 |
| GenBank Assembly Accession | GCA_026427475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026427475.1 [NCBI] |
| BioSample | SAMN21459166 [NCBI] |
| BioProject | PRJNA763873 [NCBI] |
| Submitter | Peking University Peoples Hospital |
| Submission Date | 2021-09-16T11:30:17.877 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28035 |
| Isolation Source | wound secretion |
| Geo Location | China:Fujian |
