Genome Meta Information: Staphylococcus pettenkoferi NSP002H (GCA_026659935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026659935.1 | ||
| HOMD Taxon-ID | HMT-0142 | ||
| Species Name (in use by HOMD) | Staphylococcus pettenkoferi | ||
| Organism Name (as deposited) | HMT-142 Staphylococcus pettenkoferi NSP002H | ||
| Strain or Isolate | NSP002H | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus pettenkoferi |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 130 | ||
| Contigs |
|
||
| Total Sequence Length | 2,418,100 (bp) | ||
| GC Percentage | 38.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/659/935/GCA_026659935.1_ASM2665993v1 | ||
| CDS | 2261 | ||
| Genes | 2368 | ||
| mRNA | 2368 | ||
| misc RNA | 44 | ||
| rRNA | 5 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.3 % | ||
| CheckM Completeness | 97.56 % | ||
| CheckM Contamination | 1.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2665993v1 |
| GenBank Assembly Accession | GCA_026659935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026659935.1 [NCBI] |
| BioSample | SAMN30360647 [NCBI] |
| BioProject | PRJNA870410 [NCBI] |
| Submitter | INSERM U1047 |
| Submission Date | 2022-08-17T07:33:04.107 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JANSKP01 |
| NCBI TaxID | 170573 |
| Isolation Source | |
| Geo Location | France |
