Genome Meta Information: Abiotrophia defectiva D14035481 (GCA_026783725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026783725.1 | ||
| HOMD Taxon-ID | HMT-389 | ||
| Species Name (in use by HOMD) | Abiotrophia defectiva | ||
| Organism Name (as deposited) | HMT-389 Abiotrophia defectiva D14035481 | ||
| Strain or Isolate | D14035481 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia; s__Abiotrophia defectiva |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 335.0x | ||
| Contigs |
|
||
| Total Sequence Length | 2,019,498 (bp) | ||
| GC Percentage | 46.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/783/725/GCA_026783725.1_ASM2678372v1 | ||
| CDS | 1807 | ||
| Genes | 1875 | ||
| mRNA | 1875 | ||
| misc RNA | 21 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.81 % | ||
| CheckM Completeness | 98.46 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 98.46 % | ||
| CheckM2 Contamination | 0.05 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2678372v1 |
| GenBank Assembly Accession | GCA_026783725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_026783725.1 [NCBI] |
| BioSample | SAMN26134991 [NCBI] |
| BioProject | PRJNA808899 [NCBI] |
| Submitter | Region Zealand |
| Submission Date | 2022-02-21T10:09:05.210 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAKUYY01 |
| NCBI TaxID | 46125 |
| Isolation Source | blood |
| Geo Location | Denmark:Odense |
