Genome Meta Information: Fusobacterium polymorphum JD-Fn1 (GCA_027947475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_027947475.1 | ||
| HOMD Taxon-ID | HMT-0202 | ||
| Species Name (in use by HOMD) | Fusobacterium polymorphum | ||
| Organism Name (as deposited) | HMT-202 Fusobacterium polymorphum JD-Fn1 | ||
| Strain or Isolate | JD-Fn1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium polymorphum |
||
| Sequencing Technology | Illumina NovaSeq; Oxford Nanopore | ||
| Genome Coverage | 410 | ||
| Contigs |
|
||
| Total Sequence Length | 2,470,422 (bp) | ||
| GC Percentage | 26.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/947/475/GCA_027947475.1_ASM2794747v1 | ||
| CDS | 2281 | ||
| Genes | 2367 | ||
| mRNA | 2367 | ||
| misc RNA | 23 | ||
| rRNA | 15 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.38 % | ||
| CheckM Completeness | 97.77 % | ||
| CheckM Contamination | 1.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2794747v1 |
| GenBank Assembly Accession | GCA_027947475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_027947475.1 [NCBI] |
| BioSample | SAMN32721952 [NCBI] |
| BioProject | PRJNA923398 [NCBI] |
| Submitter | Shanghai Jiao Tong University School of Medicine |
| Submission Date | 2023-01-12T21:42:03.903 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 851 |
| Isolation Source | Oral saliva sample of a patient with periodontal disease |
| Geo Location | China: Shanghai |
