Taxon Table | Genome Table
Genome Meta Information:
Streptococcus
vestibularis
DP3_4 (GCA_028308045.1)
| HOMD Genome-ID |
GCA_028308045.1
|
| HOMD Taxon-ID |
HMT-0021
|
| Species Name (in use by HOMD) |
Streptococcus vestibularis
|
| Organism Name (as deposited) |
HMT-021 Streptococcus vestibularis DP3_4
|
| Strain or Isolate |
DP3_4
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;
s__Streptococcus vestibularis |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
1
|
| Contigs |
Number of Contigs: 145
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,989,572 (bp) |
| GC Percentage |
39.53
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/308/045/GCA_028308045.1_ASM2830804v1
|
| CDS |
1884
|
| Genes |
1994
|
| mRNA |
1994
|
| misc RNA |
55
|
| rRNA |
4
|
| tRNA |
50
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.82 %
|
| CheckM Completeness |
99.63 %
|
| CheckM Contamination |
0.08 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM2830804v1
|
| GenBank Assembly Accession |
GCA_028308045.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_028308045.1
[NCBI]
|
| BioSample |
SAMN30875295
[NCBI]
|
| BioProject |
PRJNA880893
[NCBI]
|
| Submitter |
Massachusetts Institute of Technology
|
| Submission Date |
2022-09-15T15:05:05.810
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAQMFR01
|
| NCBI TaxID |
1343
|
| Isolation Source |
Supragingival and interproximal dental plaque
|
| Geo Location |
USA: Buffalo, NY
|
