Genome Meta Information: Streptococcus vestibularis DP3_6A_2 (GCA_028308145.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028308145.1 | ||
| HOMD Taxon-ID | HMT-0021 | ||
| Species Name (in use by HOMD) | Streptococcus vestibularis | ||
| Organism Name (as deposited) | HMT-021 Streptococcus vestibularis DP3_6A_2 | ||
| Strain or Isolate | DP3_6A_2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus vestibularis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 1 | ||
| Contigs |
|
||
| Total Sequence Length | 1,995,339 (bp) | ||
| GC Percentage | 39.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/308/145/GCA_028308145.1_ASM2830814v1 | ||
| CDS | 1899 | ||
| Genes | 2006 | ||
| mRNA | 2006 | ||
| misc RNA | 53 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.81 % | ||
| CheckM Completeness | 99.63 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2830814v1 |
| GenBank Assembly Accession | GCA_028308145.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028308145.1 [NCBI] |
| BioSample | SAMN30875238 [NCBI] |
| BioProject | PRJNA880893 [NCBI] |
| Submitter | Massachusetts Institute of Technology |
| Submission Date | 2022-09-15T14:39:03.463 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAQMFT01 |
| NCBI TaxID | 1343 |
| Isolation Source | Supragingival and interproximal dental plaque |
| Geo Location | USA: Buffalo, NY |
