Genome Meta Information: Streptococcus salivarius 1001713st1_D3_1001713B170207_170306 (GCA_028325655.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028325655.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius 1001713st1_D3_1001713B170207_170306 | ||
| Strain or Isolate | 1001713st1_D3_1001713B170207_170306 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 55.6022 | ||
| Contigs |
|
||
| Total Sequence Length | 2,158,320 (bp) | ||
| GC Percentage | 39.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/325/655/GCA_028325655.1_ASM2832565v1 | ||
| CDS | 1938 | ||
| Genes | 2026 | ||
| mRNA | 2026 | ||
| misc RNA | 34 | ||
| rRNA | 9 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.54 % | ||
| CheckM Completeness | 97.82 % | ||
| CheckM Contamination | 0.57 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2832565v1 |
| GenBank Assembly Accession | GCA_028325655.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028325655.1 [NCBI] |
| BioSample | SAMN31322942 [NCBI] |
| BioProject | PRJNA880610 [NCBI] |
| Submitter | Icahn School of Medicine |
| Submission Date | 2022-10-17T16:27:16.952 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAQMJK01 |
| NCBI TaxID | 1304 |
| Isolation Source | |
| Geo Location | USA |
