Genome Meta Information: Streptococcus mutans RTP21191st1_H7_RTP21191_200730 (GCA_028326035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028326035.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans RTP21191st1_H7_RTP21191_200730 | ||
| Strain or Isolate | RTP21191st1_H7_RTP21191_200730 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 25.5092 | ||
| Contigs |
|
||
| Total Sequence Length | 1,955,456 (bp) | ||
| GC Percentage | 36.81 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/035/GCA_028326035.1_ASM2832603v1 | ||
| CDS | 1823 | ||
| Genes | 1896 | ||
| mRNA | 1896 | ||
| misc RNA | 26 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.11 % | ||
| CheckM Completeness | 96.77 % | ||
| CheckM Contamination | 0.43 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2832603v1 |
| GenBank Assembly Accession | GCA_028326035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028326035.1 [NCBI] |
| BioSample | SAMN31322925 [NCBI] |
| BioProject | PRJNA880610 [NCBI] |
| Submitter | Icahn School of Medicine |
| Submission Date | 2022-10-17T16:27:16.802 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAQMKA01 |
| NCBI TaxID | 1309 |
| Isolation Source | |
| Geo Location | USA |
