Genome Meta Information: Streptococcus mutans 1001174st1_F4_RTP21191_200730 (GCA_028326125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028326125.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans 1001174st1_F4_RTP21191_200730 | ||
| Strain or Isolate | 1001174st1_F4_RTP21191_200730 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 18.5685 | ||
| Contigs |
|
||
| Total Sequence Length | 1,991,487 (bp) | ||
| GC Percentage | 36.78 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/326/125/GCA_028326125.1_ASM2832612v1 | ||
| CDS | 1873 | ||
| Genes | 1955 | ||
| mRNA | 1955 | ||
| misc RNA | 30 | ||
| rRNA | 3 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.32 % | ||
| CheckM Completeness | 98.7 % | ||
| CheckM Contamination | 0.56 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2832612v1 |
| GenBank Assembly Accession | GCA_028326125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028326125.1 [NCBI] |
| BioSample | SAMN31322921 [NCBI] |
| BioProject | PRJNA880610 [NCBI] |
| Submitter | Icahn School of Medicine |
| Submission Date | 2022-10-17T16:27:16.757 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAQMKD01 |
| NCBI TaxID | 1309 |
| Isolation Source | |
| Geo Location | USA |
