Genome Meta Information: Hominimerdicola aceti D59st1_B5_D59t2_181005 (GCA_028327595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028327595.1 | ||
| HOMD Taxon-ID | HMT-0962 | ||
| Species Name (in use by HOMD) | Hominimerdicola aceti | ||
| Organism Name (as deposited) | HMT-962 Hominimerdicola aceti D59st1_B5_D59t2_181005 | ||
| Strain or Isolate | D59st1_B5_D59t2_181005 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola; s__Hominimerdicola aceti |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 31.6346 | ||
| Contigs |
|
||
| Total Sequence Length | 3,097,113 (bp) | ||
| GC Percentage | 42.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/327/595/GCA_028327595.1_ASM2832759v1 | ||
| CDS | 2913 | ||
| Genes | 2992 | ||
| mRNA | 2992 | ||
| misc RNA | 24 | ||
| rRNA | 3 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.74 % | ||
| CheckM Completeness | 97.52 % | ||
| CheckM Contamination | 0.62 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2832759v1 |
| GenBank Assembly Accession | GCA_028327595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028327595.1 [NCBI] |
| BioSample | SAMN31322867 [NCBI] |
| BioProject | PRJNA880610 [NCBI] |
| Submitter | Icahn School of Medicine |
| Submission Date | 2022-10-17T16:27:16.260 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAQMLT01 |
| NCBI TaxID | 1160721 |
| Isolation Source | |
| Geo Location | USA |
