Genome Meta Information: Enterococcus durans R109-1 (GCA_028335645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028335645.1 | ||
| HOMD Taxon-ID | HMT-0880 | ||
| Species Name (in use by HOMD) | Enterococcus durans | ||
| Organism Name (as deposited) | HMT-880 Enterococcus durans R109-1 | ||
| Strain or Isolate | R109-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B; s__Enterococcus_B durans |
||
| Sequencing Technology | Illumina MiniSeq, Oxford Nanopore | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 3,042,529 (bp) | ||
| GC Percentage | 37.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/335/645/GCA_028335645.1_ASM2833564v1 | ||
| CDS | 2744 | ||
| Genes | 2902 | ||
| mRNA | 2902 | ||
| misc RNA | 73 | ||
| rRNA | 18 | ||
| tRNA | 66 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.64 % | ||
| CheckM Completeness | 98.71 % | ||
| CheckM Contamination | 0.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2833564v1 |
| GenBank Assembly Accession | GCA_028335645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028335645.1 [NCBI] |
| BioSample | SAMN23424509 [NCBI] |
| BioProject | PRJNA783265 [NCBI] |
| Submitter | University of Zurich |
| Submission Date | 2021-11-24T10:48:04.886 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 53345 |
| Isolation Source | fecal sample |
| Geo Location | not applicable |
