Genome Meta Information: Corynebacterium afermentans SCPM-O-B-9437 (R12) (GCA_028527885.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028527885.1 | ||
| HOMD Taxon-ID | HMT-0030 | ||
| Species Name (in use by HOMD) | Corynebacterium afermentans | ||
| Organism Name (as deposited) | HMT-030 Corynebacterium afermentans SCPM-O-B-9437 (R12) | ||
| Strain or Isolate | SCPM-O-B-9437 (R12) | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium afermentans |
||
| Sequencing Technology | MGISeq-2000 | ||
| Genome Coverage | 846.75 | ||
| Contigs |
|
||
| Total Sequence Length | 2,335,091 (bp) | ||
| GC Percentage | 64.88 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/527/885/GCA_028527885.1_ASM2852788v1 | ||
| CDS | 2150 | ||
| Genes | 2220 | ||
| mRNA | 2220 | ||
| misc RNA | 9 | ||
| rRNA | 3 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.75 % | ||
| CheckM Completeness | 97.4 % | ||
| CheckM Contamination | 0.51 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2852788v1 |
| GenBank Assembly Accession | GCA_028527885.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028527885.1 [NCBI] |
| BioSample | SAMN31031749 [NCBI] |
| BioProject | PRJNA269675 [NCBI] |
| Submitter | SRCAMB |
| Submission Date | 2022-09-27T07:13:03.760 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAQPSO01 |
| NCBI TaxID | 38286 |
| Isolation Source | nasal swab |
| Geo Location | Russia: Rostov-na-Donu |
