Genome Meta Information: Corynebacterium afermentans DSM 45751 (GCA_028609825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028609825.1 | ||
| HOMD Taxon-ID | HMT-0030 | ||
| Species Name (in use by HOMD) | Corynebacterium afermentans | ||
| Organism Name (as deposited) | HMT-030 Corynebacterium afermentans DSM 45751 | ||
| Strain or Isolate | DSM 45751 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium afermentans |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 83.8 | ||
| Contigs |
|
||
| Total Sequence Length | 2,279,521 (bp) | ||
| GC Percentage | 64.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/609/825/GCA_028609825.1_ASM2860982v1 | ||
| CDS | 2128 | ||
| Genes | 2204 | ||
| mRNA | 2204 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 96.54 % | ||
| CheckM Contamination | 0.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2860982v1 |
| GenBank Assembly Accession | GCA_028609825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028609825.1 [NCBI] |
| BioSample | SAMN13404531 [NCBI] |
| BioProject | PRJNA454382 [NCBI] |
| Submitter | Bielefeld University |
| Submission Date | 2019-11-27T05:40:30.790 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1232427 |
| Isolation Source | feces |
| Geo Location | France: Timone Hospital, Marse |
