Genome Meta Information: Corynebacterium jeikeium DSM 7171 (GCA_028609885.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_028609885.1 | ||
| HOMD Taxon-ID | HMT-0047 | ||
| Species Name (in use by HOMD) | Corynebacterium jeikeium | ||
| Organism Name (as deposited) | HMT-047 Corynebacterium jeikeium DSM 7171 | ||
| Strain or Isolate | DSM 7171 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium jeikeium |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore GridION | ||
| Genome Coverage | 103.1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,524,840 (bp) | ||
| GC Percentage | 61.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/609/885/GCA_028609885.1_ASM2860988v1 | ||
| CDS | 2212 | ||
| Genes | 2280 | ||
| mRNA | 2280 | ||
| misc RNA | 6 | ||
| rRNA | 9 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.61 % | ||
| CheckM Contamination | 0.88 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2860988v1 |
| GenBank Assembly Accession | GCA_028609885.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_028609885.1 [NCBI] |
| BioSample | SAMN13404533 [NCBI] |
| BioProject | PRJNA532605 [NCBI] |
| Submitter | Uni Bielefeld |
| Submission Date | 2019-11-27T05:40:30.826 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 38289 |
| Isolation Source | blood culture |
| Geo Location | missing |
