Genome Meta Information: Gardnerella piotii c17Ua_112 (GCA_029226345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029226345.1 | ||
| HOMD Taxon-ID | HMT-0846 | ||
| Species Name (in use by HOMD) | Gardnerella piotii | ||
| Organism Name (as deposited) | HMT-846 Gardnerella piotii c17Ua_112 | ||
| Strain or Isolate | c17Ua_112 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium piotii |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 1,509,345 (bp) | ||
| GC Percentage | 42.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/226/345/GCA_029226345.1_ASM2922634v1 | ||
| CDS | 1155 | ||
| Genes | 1217 | ||
| mRNA | 1217 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.51 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2922634v1 |
| GenBank Assembly Accession | GCA_029226345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029226345.1 [NCBI] |
| BioSample | SAMN25554339 [NCBI] |
| BioProject | PRJNA548360 [NCBI] |
| Submitter | UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto |
| Submission Date | 2022-02-01T10:37:03.570 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAKNCU01 |
| NCBI TaxID | 2914924 |
| Isolation Source | urine |
| Geo Location | Portugal: Porto |
