Genome Meta Information: Lacticaseibacillus casei DSM 115424 (GCA_029748795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029748795.1 | ||
| HOMD Taxon-ID | HMT-0568 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus casei | ||
| Organism Name (as deposited) | HMT-568 Lacticaseibacillus casei DSM 115424 | ||
| Strain or Isolate | DSM 115424 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus casei |
||
| Sequencing Technology | Oxford Nanopore GridION; Illumina MiSeq | ||
| Genome Coverage | 481.4 | ||
| Contigs |
|
||
| Total Sequence Length | 3,134,028 (bp) | ||
| GC Percentage | 47.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/748/795/GCA_029748795.1_ASM2974879v1 | ||
| CDS | 2894 | ||
| Genes | 3005 | ||
| mRNA | 3005 | ||
| misc RNA | 36 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.95 % | ||
| CheckM Completeness | 98.91 % | ||
| CheckM Contamination | 0.84 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2974879v1 |
| GenBank Assembly Accession | GCA_029748795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029748795.1 [NCBI] |
| BioSample | SAMN33777239 [NCBI] |
| BioProject | PRJNA945260 [NCBI] |
| Submitter | Bielefeld University |
| Submission Date | 2023-03-16T07:08:04.543 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3035291 |
| Isolation Source | grass silage |
| Geo Location | Austria: Kapfenberg |
