Genome Meta Information: Corynebacterium bovis 24956 (GCA_029846575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029846575.1 | ||
| HOMD Taxon-ID | HMT-0208 | ||
| Species Name (in use by HOMD) | Corynebacterium bovis | ||
| Organism Name (as deposited) | HMT-208 Corynebacterium bovis 24956 | ||
| Strain or Isolate | 24956 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium bovis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 713 | ||
| Contigs |
|
||
| Total Sequence Length | 2,586,948 (bp) | ||
| GC Percentage | 73.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/846/575/GCA_029846575.1_ASM2984657v1 | ||
| CDS | 2036 | ||
| Genes | 2112 | ||
| mRNA | 2112 | ||
| misc RNA | 8 | ||
| rRNA | 6 | ||
| tRNA | 60 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 96.46 % | ||
| CheckM Completeness | 98.59 % | ||
| CheckM Contamination | 0.03 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2984657v1 |
| GenBank Assembly Accession | GCA_029846575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029846575.1 [NCBI] |
| BioSample | SAMN34129807 [NCBI] |
| BioProject | PRJNA953983 [NCBI] |
| Submitter | The Jackson Laboratory |
| Submission Date | 2023-04-10T13:23:06.373 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JARWBD01 |
| NCBI TaxID | 36808 |
| Isolation Source | skin swab of homozygous nude mice |
| Geo Location | USA: Maine |
