Genome Meta Information: Aquamicrobium lusatiense D-9 (GCA_029872115.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_029872115.1 | ||
| HOMD Taxon-ID | HMT-0660 | ||
| Species Name (in use by HOMD) | Aquamicrobium lusatiense | ||
| Organism Name (as deposited) | HMT-660 Aquamicrobium lusatiense D-9 | ||
| Strain or Isolate | D-9 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium; s__Mesorhizobium lusatiense |
||
| Sequencing Technology | Illumina NovaSeq; Oxford Nanopore | ||
| Genome Coverage | 610 | ||
| Contigs |
|
||
| Total Sequence Length | 4,399,299 (bp) | ||
| GC Percentage | 62.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/872/115/GCA_029872115.1_ASM2987211v1 | ||
| CDS | 4161 | ||
| Genes | 4261 | ||
| mRNA | 4261 | ||
| misc RNA | 43 | ||
| rRNA | 6 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.53 % | ||
| CheckM Completeness | 98.06 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2987211v1 |
| GenBank Assembly Accession | GCA_029872115.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_029872115.1 [NCBI] |
| BioSample | SAMN34244584 [NCBI] |
| BioProject | PRJNA957093 [NCBI] |
| Submitter | dalian university of technology |
| Submission Date | 2023-04-19T02:50:05.137 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JARXND01 |
| NCBI TaxID | 89772 |
| Isolation Source | sediment |
| Geo Location | China:Panjin |
