Genome Meta Information: Lachnoanaerobaculum gingivalis SHL-20230108WGSARO1-L360107582 (GCA_030008055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030008055.1 | ||
| HOMD Taxon-ID | HMT-0460 | ||
| Species Name (in use by HOMD) | Lachnoanaerobaculum gingivalis | ||
| Organism Name (as deposited) | HMT-460 Lachnoanaerobaculum gingivalis SHL-20230108WGSARO1-L360107582 | ||
| Strain or Isolate | SHL-20230108WGSARO1-L360107582 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum; s__Lachnoanaerobaculum gingivalis |
||
| Sequencing Technology | Oxford Nanopore GridION; Illumina MiniSeq | ||
| Genome Coverage | 14 | ||
| Contigs |
|
||
| Total Sequence Length | 3,079,059 (bp) | ||
| GC Percentage | 36.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/008/055/GCA_030008055.1_ASM3000805v1 | ||
| CDS | 2819 | ||
| Genes | 2903 | ||
| mRNA | 0 | ||
| misc RNA | 23 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.02 % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3000805v1 |
| GenBank Assembly Accession | GCA_030008055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030008055.1 [NCBI] |
| BioSample | SAMN34488910 [NCBI] |
| BioProject | PRJNA964711 [NCBI] |
| Submitter | Shared Hospital Laboratory |
| Submission Date | 2023-05-01T12:51:06.900 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2490855 |
| Isolation Source | blood |
| Geo Location | Canada: Toronto |
