Genome Meta Information: Haemophilus parainfluenzae EL1 (GCA_030144815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030144815.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae EL1 | ||
| Strain or Isolate | EL1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae |
||
| Sequencing Technology | Illumina NextSeq and Oxford Nanopore MinION | ||
| Genome Coverage | 555 | ||
| Contigs |
|
||
| Total Sequence Length | 2,153,240 (bp) | ||
| GC Percentage | 39.41 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/144/815/GCA_030144815.1_ASM3014481v1 | ||
| CDS | 2008 | ||
| Genes | 2113 | ||
| mRNA | 2113 | ||
| misc RNA | 27 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.85 % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.32 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3014481v1 |
| GenBank Assembly Accession | GCA_030144815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030144815.1 [NCBI] |
| BioSample | SAMN34140652 [NCBI] |
| BioProject | PRJNA954350 [NCBI] |
| Submitter | University of Rhode Island |
| Submission Date | 2023-04-11T12:07:04.030 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 729 |
| Isolation Source | |
| Geo Location | USA: Rhode Island |
