Taxon Table | Genome Table
Genome Meta Information:
Veillonella
atypica
UMB10101 (GCA_030219125.1)
| HOMD Genome-ID |
GCA_030219125.1
|
| HOMD Taxon-ID |
HMT-0524
|
| Species Name (in use by HOMD) |
Veillonella atypica
|
| Organism Name (as deposited) |
HMT-524 Veillonella atypica UMB10101
|
| Strain or Isolate |
UMB10101
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;
s__Veillonella atypica |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
745.806
|
| Contigs |
Number of Contigs: 205
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,124,476 (bp) |
| GC Percentage |
39.15
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/219/125/GCA_030219125.1_ASM3021912v1
|
| CDS |
1858
|
| Genes |
1933
|
| mRNA |
1933
|
| misc RNA |
20
|
| rRNA |
4
|
| tRNA |
50
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.04 %
|
| CheckM Completeness |
98.12 %
|
| CheckM Contamination |
2.36 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM3021912v1
|
| GenBank Assembly Accession |
GCA_030219125.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_030219125.1
[NCBI]
|
| BioSample |
SAMN34996420
[NCBI]
|
| BioProject |
PRJNA970254
[NCBI]
|
| Submitter |
Loyola University Chicago
|
| Submission Date |
2023-05-08T11:18:07.547
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JASORJ01
|
| NCBI TaxID |
39777
|
| Isolation Source |
|
| Geo Location |
USA: Maywood, IL
|
