Genome Meta Information: Streptococcus intermedius UMB9934 (GCA_030226005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030226005.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius UMB9934 | ||
| Strain or Isolate | UMB9934 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 214.848 | ||
| Contigs |
|
||
| Total Sequence Length | 1,906,605 (bp) | ||
| GC Percentage | 37.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/226/005/GCA_030226005.1_ASM3022600v1 | ||
| CDS | 1817 | ||
| Genes | 1899 | ||
| mRNA | 1899 | ||
| misc RNA | 34 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.37 % | ||
| CheckM Completeness | 94.06 % | ||
| CheckM Contamination | 0.57 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022600v1 |
| GenBank Assembly Accession | GCA_030226005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030226005.1 [NCBI] |
| BioSample | SAMN34998707 [NCBI] |
| BioProject | PRJNA970254 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2023-05-08T14:01:08.403 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASOXC01 |
| NCBI TaxID | 1338 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
