Genome Meta Information: Corynebacterium appendicis MSK095 (GCA_030229545.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030229545.1 | ||
| HOMD Taxon-ID | HMT-0033 | ||
| Species Name (in use by HOMD) | Corynebacterium appendicis | ||
| Organism Name (as deposited) | HMT-033 Corynebacterium appendicis MSK095 | ||
| Strain or Isolate | MSK095 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium appendicis |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 117 | ||
| Contigs |
|
||
| Total Sequence Length | 2,155,492 (bp) | ||
| GC Percentage | 64.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/229/545/GCA_030229545.1_ASM3022954v1 | ||
| CDS | 2018 | ||
| Genes | 2086 | ||
| mRNA | 2086 | ||
| misc RNA | 11 | ||
| rRNA | 2 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.85 % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.79 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022954v1 |
| GenBank Assembly Accession | GCA_030229545.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030229545.1 [NCBI] |
| BioSample | SAMN35346725 [NCBI] |
| BioProject | PRJNA804245 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2023-05-24T14:12:06.057 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASPIH01 |
| NCBI TaxID | 163202 |
| Isolation Source | nasopharyngeal swab |
| Geo Location | Botswana: Gaborone |
