Genome Meta Information: Staphylococcus lugdunensis UMB7933 (GCA_030230405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030230405.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis UMB7933 | ||
| Strain or Isolate | UMB7933 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 39.4494 | ||
| Contigs |
|
||
| Total Sequence Length | 2,458,711 (bp) | ||
| GC Percentage | 33.77 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/230/405/GCA_030230405.1_ASM3023040v1 | ||
| CDS | 2305 | ||
| Genes | 2419 | ||
| mRNA | 2419 | ||
| misc RNA | 80 | ||
| rRNA | 4 | ||
| tRNA | 29 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.44 % | ||
| CheckM Completeness | 94.59 % | ||
| CheckM Contamination | 0.98 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3023040v1 |
| GenBank Assembly Accession | GCA_030230405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030230405.1 [NCBI] |
| BioSample | SAMN35153897 [NCBI] |
| BioProject | PRJNA970254 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2023-05-18T09:46:07.390 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASPCX01 |
| NCBI TaxID | 28035 |
| Isolation Source | urine |
| Geo Location | USA: Maywood, IL |
