Taxon Table | Genome Table
Genome Meta Information:
Corynebacterium
striatum
MSK065 (GCA_030232105.1)
| HOMD Genome-ID |
GCA_030232105.1
|
| HOMD Taxon-ID |
HMT-0072
|
| Species Name (in use by HOMD) |
Corynebacterium striatum
|
| Organism Name (as deposited) |
HMT-072 Corynebacterium striatum MSK065
|
| Strain or Isolate |
MSK065
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;
s__Corynebacterium striatum |
| Sequencing Technology |
Illumina NovaSeq
|
| Genome Coverage |
84
|
| Contigs |
Number of Contigs: 156
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,977,329 (bp) |
| GC Percentage |
59.31
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/105/GCA_030232105.1_ASM3023210v1
|
| CDS |
2800
|
| Genes |
2869
|
| mRNA |
2869
|
| misc RNA |
9
|
| rRNA |
3
|
| tRNA |
56
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.75 %
|
| CheckM Completeness |
99.9 %
|
| CheckM Contamination |
0.13 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM3023210v1
|
| GenBank Assembly Accession |
GCA_030232105.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_030232105.1
[NCBI]
|
| BioSample |
SAMN35346703
[NCBI]
|
| BioProject |
PRJNA804245
[NCBI]
|
| Submitter |
Duke University
|
| Submission Date |
2023-05-24T14:12:05.833
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
JASPJD01
|
| NCBI TaxID |
43770
|
| Isolation Source |
Endotracheal aspirate
|
| Geo Location |
USA: Durham, NC
|
