Genome Meta Information: Corynebacterium striatum MSK059 (GCA_030232215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030232215.1 | ||
| HOMD Taxon-ID | HMT-0072 | ||
| Species Name (in use by HOMD) | Corynebacterium striatum | ||
| Organism Name (as deposited) | HMT-072 Corynebacterium striatum MSK059 | ||
| Strain or Isolate | MSK059 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium striatum |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 95 | ||
| Contigs |
|
||
| Total Sequence Length | 2,636,129 (bp) | ||
| GC Percentage | 59.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/215/GCA_030232215.1_ASM3023221v1 | ||
| CDS | 2439 | ||
| Genes | 2505 | ||
| mRNA | 2505 | ||
| misc RNA | 8 | ||
| rRNA | 3 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.05 % | ||
| CheckM Completeness | 99.9 % | ||
| CheckM Contamination | 0.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3023221v1 |
| GenBank Assembly Accession | GCA_030232215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030232215.1 [NCBI] |
| BioSample | SAMN35346700 [NCBI] |
| BioProject | PRJNA804245 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2023-05-24T14:12:05.803 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASPJG01 |
| NCBI TaxID | 43770 |
| Isolation Source | Synovial fluid |
| Geo Location | USA: Durham, NC |
