Genome Meta Information: Streptococcus salivarius VTCC 12812 (GCA_030284685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030284685.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius VTCC 12812 | ||
| Strain or Isolate | VTCC 12812 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus raffinosi |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 460 | ||
| Contigs |
|
||
| Total Sequence Length | 2,156,728 (bp) | ||
| GC Percentage | 39.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/284/685/GCA_030284685.1_ASM3028468v1 | ||
| CDS | 1987 | ||
| Genes | 2096 | ||
| mRNA | 2096 | ||
| misc RNA | 66 | ||
| rRNA | 3 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0.26 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3028468v1 |
| GenBank Assembly Accession | GCA_030284685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030284685.1 [NCBI] |
| BioSample | SAMN35682239 [NCBI] |
| BioProject | PRJNA981656 [NCBI] |
| Submitter | VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi |
| Submission Date | 2023-06-09T01:22:19.073 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASUZV01 |
| NCBI TaxID | 3053355 |
| Isolation Source | Breast milk |
| Geo Location | Viet Nam: Ha Noi |
