Genome Meta Information: Haemophilus parainfluenzae SZY H51 (GCA_030405845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030405845.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae SZY H51 | ||
| Strain or Isolate | SZY H51 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D sp030405845 |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 250 | ||
| Contigs |
|
||
| Total Sequence Length | 2,155,846 (bp) | ||
| GC Percentage | 39.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/405/845/GCA_030405845.1_ASM3040584v1 | ||
| CDS | 2107 | ||
| Genes | 2196 | ||
| mRNA | 2196 | ||
| misc RNA | 38 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.26 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3040584v1 |
| GenBank Assembly Accession | GCA_030405845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030405845.1 [NCBI] |
| BioSample | SAMN34146969 [NCBI] |
| BioProject | PRJNA954267 [NCBI] |
| Submitter | Guangdong Provincial Hospital of Traditional Chinese Medicine |
| Submission Date | 2023-04-11T22:35:04.687 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASGBG01 |
| NCBI TaxID | 3041427 |
| Isolation Source | |
| Geo Location | China: Guangzhou |
