Genome Meta Information: Corynebacterium diphtheriae DSM 44123 (GCA_030408695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030408695.1 | ||
| HOMD Taxon-ID | HMT-0591 | ||
| Species Name (in use by HOMD) | Corynebacterium diphtheriae | ||
| Organism Name (as deposited) | HMT-591 Corynebacterium diphtheriae DSM 44123 | ||
| Strain or Isolate | DSM 44123 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium diphtheriae |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore GridION | ||
| Genome Coverage | 120.6 | ||
| Contigs |
|
||
| Total Sequence Length | 2,405,729 (bp) | ||
| GC Percentage | 53.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/695/GCA_030408695.1_ASM3040869v1 | ||
| CDS | 2256 | ||
| Genes | 2335 | ||
| mRNA | 2335 | ||
| misc RNA | 10 | ||
| rRNA | 15 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.5 % | ||
| CheckM Contamination | 0.12 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3040869v1 |
| GenBank Assembly Accession | GCA_030408695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030408695.1 [NCBI] |
| BioSample | SAMN13404519 [NCBI] |
| BioProject | PRJNA516158 [NCBI] |
| Submitter | Bielefeld University |
| Submission Date | 2019-11-27T05:40:30.536 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1717 |
| Isolation Source | throat of a patient with diphtheria |
| Geo Location | USA: New York |
