Genome Meta Information: Streptococcus infantis SO4 (GCA_030440055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030440055.1 | ||
| HOMD Taxon-ID | HMT-0431 | ||
| Species Name (in use by HOMD) | Streptococcus infantis | ||
| Organism Name (as deposited) | HMT-431 Streptococcus infantis clade-431 SO4 | ||
| Strain or Isolate | SO4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus infantis_F |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 25 | ||
| Contigs |
|
||
| Total Sequence Length | 2,062,892 (bp) | ||
| GC Percentage | 39.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/055/GCA_030440055.1_ASM3044005v1 | ||
| CDS | 1934 | ||
| Genes | 2025 | ||
| mRNA | 2025 | ||
| misc RNA | 44 | ||
| rRNA | 4 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.85 % | ||
| CheckM Contamination | 0.13 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3044005v1 |
| GenBank Assembly Accession | GCA_030440055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030440055.1 [NCBI] |
| BioSample | SAMN32530616 [NCBI] |
| BioProject | PRJNA917188 [NCBI] |
| Submitter | University Hospital Dresden |
| Submission Date | 2023-01-02T05:36:12.293 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAQFJI01 |
| NCBI TaxID | 3018249 |
| Isolation Source | sputum |
| Geo Location | Germany |
