Genome Meta Information: Streptococcus salivarius SS4 (GCA_030440125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030440125.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius SS4 | ||
| Strain or Isolate | SS4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sp001556435 |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 19 | ||
| Contigs |
|
||
| Total Sequence Length | 2,392,142 (bp) | ||
| GC Percentage | 39.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/440/125/GCA_030440125.1_ASM3044012v1 | ||
| CDS | 2175 | ||
| Genes | 2264 | ||
| mRNA | 2264 | ||
| misc RNA | 39 | ||
| rRNA | 5 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3044012v1 |
| GenBank Assembly Accession | GCA_030440125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030440125.1 [NCBI] |
| BioSample | SAMN32531404 [NCBI] |
| BioProject | PRJNA917188 [NCBI] |
| Submitter | University Hospital Dresden |
| Submission Date | 2023-01-02T07:13:04.347 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAQFJM01 |
| NCBI TaxID | 3018253 |
| Isolation Source | sputum |
| Geo Location | Germany |
