Genome Meta Information: Actinomyces oris S18M_Sa_13 (GCA_030527985.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030527985.1 | ||
| HOMD Taxon-ID | HMT-169 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-169 Actinomyces oris clade-169 S18M_Sa_13 | ||
| Strain or Isolate | S18M_Sa_13 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces sp915069725 |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 85.4x | ||
| Contigs |
|
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| Total Sequence Length | 2,998,464 (bp) | ||
| GC Percentage | 68.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/527/985/GCA_030527985.1_ASM3052798v1 | ||
| CDS | 2500 | ||
| Genes | 2562 | ||
| mRNA | 2562 | ||
| misc RNA | 13 | ||
| rRNA | 0 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.07 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.25 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3052798v1 |
| GenBank Assembly Accession | GCA_030527985.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030527985.1 [NCBI] |
| BioSample | SAMN36400161 [NCBI] |
| BioProject | PRJNA983076 [NCBI] |
| Submitter | Center for Bioinformatics |
| Submission Date | 2023-07-11T04:00:15.063 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAUMZT01 |
| NCBI TaxID | 29317 |
| Isolation Source | saliva |
| Geo Location | Germany: Zoo Saarbruecken |
