Genome Meta Information: Streptococcus mutans P28C7 (GCA_030586545.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030586545.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans P28C7 | ||
| Strain or Isolate | P28C7 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 0.99 | ||
| Contigs |
|
||
| Total Sequence Length | 2,010,966 (bp) | ||
| GC Percentage | 36.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/586/545/GCA_030586545.1_ASM3058654v1 | ||
| CDS | 1899 | ||
| Genes | 1993 | ||
| mRNA | 1993 | ||
| misc RNA | 40 | ||
| rRNA | 5 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.1 % | ||
| CheckM Completeness | 99.53 % | ||
| CheckM Contamination | 1.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3058654v1 |
| GenBank Assembly Accession | GCA_030586545.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030586545.1 [NCBI] |
| BioSample | SAMN36694945 [NCBI] |
| BioProject | PRJNA997996 [NCBI] |
| Submitter | Universidad de Antioquia |
| Submission Date | 2023-07-24T12:40:16.913 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAUQWG01 |
| NCBI TaxID | 1309 |
| Isolation Source | dental |
| Geo Location | Colombia:Medellin, Antioquia |
