Genome Meta Information: Streptococcus intermedius SMC7156 (GCA_030676575.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030676575.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius SMC7156 | ||
| Strain or Isolate | SMC7156 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 855 | ||
| Contigs |
|
||
| Total Sequence Length | 1,978,687 (bp) | ||
| GC Percentage | 37.45 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/676/575/GCA_030676575.1_ASM3067657v1 | ||
| CDS | 1881 | ||
| Genes | 1967 | ||
| mRNA | 1967 | ||
| misc RNA | 36 | ||
| rRNA | 5 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.35 % | ||
| CheckM Completeness | 95.17 % | ||
| CheckM Contamination | 2.89 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3067657v1 |
| GenBank Assembly Accession | GCA_030676575.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030676575.1 [NCBI] |
| BioSample | SAMN36787851 [NCBI] |
| BioProject | PRJNA994491 [NCBI] |
| Submitter | Dartmouth College |
| Submission Date | 2023-08-01T15:26:04.255 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAUUIL01 |
| NCBI TaxID | 1338 |
| Isolation Source | |
| Geo Location | USA: NH |
