Genome Meta Information: Streptococcus mutans P21S6 (GCA_030739475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030739475.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans P21S6 | ||
| Strain or Isolate | P21S6 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 256.3 | ||
| Contigs |
|
||
| Total Sequence Length | 1,972,578 (bp) | ||
| GC Percentage | 36.77 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/739/475/GCA_030739475.1_ASM3073947v1 | ||
| CDS | 1835 | ||
| Genes | 1936 | ||
| mRNA | 1936 | ||
| misc RNA | 42 | ||
| rRNA | 6 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.29 % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 0.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3073947v1 |
| GenBank Assembly Accession | GCA_030739475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030739475.1 [NCBI] |
| BioSample | SAMN34395302 [NCBI] |
| BioProject | PRJNA961197 [NCBI] |
| Submitter | Universidad de Antioquia |
| Submission Date | 2023-04-27T07:34:24.470 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASAUL01 |
| NCBI TaxID | 1309 |
| Isolation Source | teeth |
| Geo Location | Colombia: Medellin |
