Genome Meta Information: Lacticaseibacillus casei NCIMB 15471 (GCA_030770265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030770265.1 | ||
| HOMD Taxon-ID | HMT-0568 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus casei | ||
| Organism Name (as deposited) | HMT-568 Lacticaseibacillus casei NCIMB 15471 | ||
| Strain or Isolate | NCIMB 15471 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus casei |
||
| Sequencing Technology | Oxford Nanopore GridION; Illumina MiSeq | ||
| Genome Coverage | 502.4 | ||
| Contigs |
|
||
| Total Sequence Length | 3,055,873 (bp) | ||
| GC Percentage | 48.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/770/265/GCA_030770265.1_ASM3077026v1 | ||
| CDS | 2792 | ||
| Genes | 2895 | ||
| mRNA | 2895 | ||
| misc RNA | 28 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.91 % | ||
| CheckM Contamination | 0.76 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3077026v1 |
| GenBank Assembly Accession | GCA_030770265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030770265.1 [NCBI] |
| BioSample | SAMN36868838 [NCBI] |
| BioProject | PRJNA1002950 [NCBI] |
| Submitter | Bielefeld University |
| Submission Date | 2023-08-07T09:12:04.820 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3068305 |
| Isolation Source | grass silage |
| Geo Location | Austria |
