Genome Meta Information: Variovorax paradoxus DS3943 (GCA_030812115.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030812115.1 | ||
| HOMD Taxon-ID | HMT-0717 | ||
| Species Name (in use by HOMD) | Variovorax paradoxus | ||
| Organism Name (as deposited) | HMT-717 Variovorax paradoxus DS3943 | ||
| Strain or Isolate | DS3943 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax; s__Variovorax paradoxus_C |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 212 | ||
| Contigs |
|
||
| Total Sequence Length | 7,076,942 (bp) | ||
| GC Percentage | 66.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/812/115/GCA_030812115.1_ASM3081211v1 | ||
| CDS | 6489 | ||
| Genes | 6588 | ||
| mRNA | 6588 | ||
| misc RNA | 31 | ||
| rRNA | 3 | ||
| tRNA | 64 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.96 % | ||
| CheckM Completeness | 99.34 % | ||
| CheckM Contamination | 1.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3081211v1 |
| GenBank Assembly Accession | GCA_030812115.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030812115.1 [NCBI] |
| BioSample | SAMN18243415 [NCBI] |
| BioProject | PRJNA709192 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2021-03-10T12:43:31.607 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAUSSC01 |
| NCBI TaxID | 436515 |
| Isolation Source | missing |
| Geo Location | missing |
