Genome Meta Information: Akkermansia muciniphila MmAkkUCB1 (GCA_030848285.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030848285.1 | ||
| HOMD Taxon-ID | HMT-963 | ||
| Species Name (in use by HOMD) | Akkermansia muciniphila | ||
| Organism Name (as deposited) | HMT-963 Akkermansia muciniphila MmAkkUCB1 | ||
| Strain or Isolate | MmAkkUCB1 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia; s__Akkermansia muciniphila |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 176.0x | ||
| Contigs |
|
||
| Total Sequence Length | 2,742,000 (bp) | ||
| GC Percentage | 55.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/848/285/GCA_030848285.1_ASM3084828v1 | ||
| CDS | 2283 | ||
| Genes | 2353 | ||
| mRNA | 2353 | ||
| misc RNA | 6 | ||
| rRNA | 9 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.06 % | ||
| CheckM Completeness | 97.96 % | ||
| CheckM Contamination | 0.68 % | ||
| CheckM2 Completeness | 99.98 % | ||
| CheckM2 Contamination | 0.23 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3084828v1 |
| GenBank Assembly Accession | GCA_030848285.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030848285.1 [NCBI] |
| BioSample | SAMN32279753 [NCBI] |
| BioProject | PRJNA913185 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2022-12-16T17:23:07.840 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 239935 |
| Isolation Source | Mouse feces |
| Geo Location | USA: Berkeley, California |
