Taxon Table | Genome Table
Genome Meta Information:
Haemophilus
parahaemolyticus
OHS0002 (GCA_030938875.1)
| HOMD Genome-ID |
GCA_030938875.1
|
| HOMD Taxon-ID |
HMT-0945
|
| Species Name (in use by HOMD) |
Haemophilus parahaemolyticus
|
| Organism Name (as deposited) |
HMT-945 Haemophilus parahaemolyticus OHS0002
|
| Strain or Isolate |
OHS0002
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A;
s__Haemophilus_A parahaemolyticus |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
16.96
|
| Contigs |
Number of Contigs: 267
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,847,273 (bp) |
| GC Percentage |
40.45
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/938/875/GCA_030938875.1_ASM3093887v1
|
| CDS |
1665
|
| Genes |
1727
|
| mRNA |
1727
|
| misc RNA |
21
|
| rRNA |
1
|
| tRNA |
40
|
| tmRNA |
0
|
| ANI (Average Nucluotide Identity) |
95.79 %
|
| CheckM Completeness |
97.56 %
|
| CheckM Contamination |
1.93 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM3093887v1
|
| GenBank Assembly Accession |
GCA_030938875.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_030938875.1
[NCBI]
|
| BioSample |
SAMN34352703
[NCBI]
|
| BioProject |
PRJNA717815
[NCBI]
|
| Submitter |
Amazonas State University
|
| Submission Date |
2023-04-24T12:33:05.847
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAUPSI01
|
| NCBI TaxID |
735
|
| Isolation Source |
oral cavity
|
| Geo Location |
Brazil: Amazonas, Manaus
|
