Taxon Table | Genome Table
Genome Meta Information:
Cutibacterium
avidum
OUH_B21_954616 (GCA_031158355.1)
| HOMD Genome-ID |
GCA_031158355.1
|
| HOMD Taxon-ID |
HMT-0552
|
| Species Name (in use by HOMD) |
Cutibacterium avidum
|
| Organism Name (as deposited) |
HMT-552 Cutibacterium avidum OUH_B21_954616
|
| Strain or Isolate |
OUH_B21_954616
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium;
s__Cutibacterium avidum |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
50
|
| Contigs |
Number of Contigs: 185
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,525,795 (bp) |
| GC Percentage |
63.37
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/158/355/GCA_031158355.1_ASM3115835v1
|
| CDS |
2330
|
| Genes |
2403
|
| mRNA |
2403
|
| misc RNA |
23
|
| rRNA |
4
|
| tRNA |
45
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.45 %
|
| CheckM Completeness |
93.98 %
|
| CheckM Contamination |
4.72 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM3115835v1
|
| GenBank Assembly Accession |
GCA_031158355.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_031158355.1
[NCBI]
|
| BioSample |
SAMN37160329
[NCBI]
|
| BioProject |
PRJNA1009783
[NCBI]
|
| Submitter |
Odense University Hospital
|
| Submission Date |
2023-08-28T07:53:04.870
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JAVIFC01
|
| NCBI TaxID |
33010
|
| Isolation Source |
blood
|
| Geo Location |
Denmark
|
