Genome Meta Information: Actinomyces naeslundii ATCC 12104 (GCA_031296595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_031296595.1 | ||
| HOMD Taxon-ID | HMT-176 | ||
| Species Name (in use by HOMD) | Actinomyces naeslundii | ||
| Organism Name (as deposited) | HMT-176 Actinomyces naeslundii ATCC 12104 | ||
| Strain or Isolate | ATCC 12104 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces naeslundii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 379.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,123,836 (bp) | ||
| GC Percentage | 67.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/296/595/GCA_031296595.1_ASM3129659v1 | ||
| CDS | 2597 | ||
| Genes | 2669 | ||
| mRNA | 2669 | ||
| misc RNA | 16 | ||
| rRNA | 4 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 99.79 % | ||
| CheckM2 Contamination | 0.11 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3129659v1 |
| GenBank Assembly Accession | GCA_031296595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_031296595.1 [NCBI] |
| BioSample | SAMN35360563 [NCBI] |
| BioProject | PRJNA976213 [NCBI] |
| Submitter | University of Malaya |
| Submission Date | 2023-05-25T09:17:04.333 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASPFA01 |
| NCBI TaxID | 1655 |
| Isolation Source | |
| Geo Location | not applicable |
