Genome Meta Information: Fusobacterium polymorphum SB040 (GCA_037893865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_037893865.1 | ||
| HOMD Taxon-ID | HMT-0202 | ||
| Species Name (in use by HOMD) | Fusobacterium polymorphum | ||
| Organism Name (as deposited) | HMT-202 Fusobacterium polymorphum SB040 | ||
| Strain or Isolate | SB040 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium polymorphum |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 124 | ||
| Contigs |
|
||
| Total Sequence Length | 2,334,368 (bp) | ||
| GC Percentage | 27.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/037/893/865/GCA_037893865.1_ASM3789386v1 | ||
| CDS | 2189 | ||
| Genes | 2277 | ||
| mRNA | 2277 | ||
| misc RNA | 25 | ||
| rRNA | 15 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.33 % | ||
| CheckM Completeness | 99.37 % | ||
| CheckM Contamination | 0.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3789386v1 |
| GenBank Assembly Accession | GCA_037893865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_037893865.1 [NCBI] |
| BioSample | SAMN19765487 [NCBI] |
| BioProject | PRJNA549513 [NCBI] |
| Submitter | Forsyth Institute |
| Submission Date | 2021-06-17T17:35:03.680 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 76857 |
| Isolation Source | resected colorectal tumor |
| Geo Location | not available |
