Genome Meta Information: Fusobacterium necrophorum ATCC 25286 (GCA_900104395.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900104395.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum ATCC 25286 | ||
| Strain or Isolate | ATCC 25286 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | Illumina HiSeq 2500 | ||
| Genome Coverage | 448 | ||
| Contigs |
|
||
| Total Sequence Length | 2,550,375 (bp) | ||
| GC Percentage | 34.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/104/395/GCA_900104395.1_IMG-taxon_2597490366_annotated_assembly | ||
| CDS | 2260 | ||
| Genes | 2328 | ||
| mRNA | 2328 | ||
| misc RNA | 15 | ||
| rRNA | 6 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.5 % | ||
| CheckM Completeness | 96.56 % | ||
| CheckM Contamination | 7.46 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2597490366 annotated |
| GenBank Assembly Accession | GCA_900104395.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900104395.1 [NCBI] |
| BioSample | SAMN02983009 [NCBI] |
| BioProject | PRJEB16277 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2014-08-11T20:16:26.880 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FMXX01 |
| NCBI TaxID | 859 |
| Isolation Source | |
| Geo Location | missing |
