Genome Meta Information: Bifidobacterium dentium DSM 20436 (GCA_900105745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900105745.1 | ||
| HOMD Taxon-ID | HMT-0588 | ||
| Species Name (in use by HOMD) | Bifidobacterium dentium | ||
| Organism Name (as deposited) | HMT-588 Bifidobacterium dentium DSM 20436 | ||
| Strain or Isolate | DSM 20436 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium dentium |
||
| Sequencing Technology | PacBio RS | ||
| Genome Coverage | 681 | ||
| Contigs |
|
||
| Total Sequence Length | 2,668,067 (bp) | ||
| GC Percentage | 58.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/105/745/GCA_900105745.1_IMG-taxon_2634166294_annotated_assembly | ||
| CDS | 2173 | ||
| Genes | 2248 | ||
| mRNA | 2248 | ||
| misc RNA | 9 | ||
| rRNA | 9 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.37 % | ||
| CheckM Contamination | 0.85 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2634166294 annotated |
| GenBank Assembly Accession | GCA_900105745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900105745.1 [NCBI] |
| BioSample | SAMN05192536 [NCBI] |
| BioProject | PRJEB16375 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2016-05-31T17:46:17.273 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | FNSE01 |
| NCBI TaxID | 1150423 |
| Isolation Source | |
| Geo Location | missing |
