Genome Meta Information: Haemophilus ducreyi ATCC 33940 (GCA_900109315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900109315.1 | ||
| HOMD Taxon-ID | HMT-0821 | ||
| Species Name (in use by HOMD) | Haemophilus ducreyi | ||
| Organism Name (as deposited) | HMT-821 Haemophilus ducreyi ATCC 33940 | ||
| Strain or Isolate | ATCC 33940 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_B; s__Haemophilus_B ducreyi |
||
| Sequencing Technology | Illumina HiSeq 2500 | ||
| Genome Coverage | 1183 | ||
| Contigs |
|
||
| Total Sequence Length | 1,576,562 (bp) | ||
| GC Percentage | 37.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/109/315/GCA_900109315.1_IMG-taxon_2597490374_annotated_assembly | ||
| CDS | 1544 | ||
| Genes | 1608 | ||
| mRNA | 1608 | ||
| misc RNA | 17 | ||
| rRNA | 8 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.49 % | ||
| CheckM Contamination | 0.59 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2597490374 annotated |
| GenBank Assembly Accession | GCA_900109315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900109315.1 [NCBI] |
| BioSample | SAMN02983000 [NCBI] |
| BioProject | PRJEB16819 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2014-08-11T20:13:14.933 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | FOJC01 |
| NCBI TaxID | 730 |
| Isolation Source | |
| Geo Location | missing |
