Genome Meta Information: Capnocytophaga haemolytica DSM 11385 (GCA_900115315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900115315.1 | ||
| HOMD Taxon-ID | HMT-0627 | ||
| Species Name (in use by HOMD) | Capnocytophaga haemolytica | ||
| Organism Name (as deposited) | HMT-627 Capnocytophaga haemolytica DSM 11385 | ||
| Strain or Isolate | DSM 11385 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga haemolytica |
||
| Sequencing Technology | Illumina HiSeq 2500-1TB | ||
| Genome Coverage | 417 | ||
| Contigs |
|
||
| Total Sequence Length | 2,655,673 (bp) | ||
| GC Percentage | 44.25 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/115/315/GCA_900115315.1_IMG-taxon_2693429878_annotated_assembly | ||
| CDS | 2396 | ||
| Genes | 2445 | ||
| mRNA | 2445 | ||
| misc RNA | 3 | ||
| rRNA | 2 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.57 % | ||
| CheckM Contamination | 2.53 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2693429878 annotated |
| GenBank Assembly Accession | GCA_900115315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900115315.1 [NCBI] |
| BioSample | SAMN05444369 [NCBI] |
| BioProject | PRJEB17163 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2016-07-26T23:04:22.696 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | FOVX01 |
| NCBI TaxID | 45243 |
| Isolation Source | missing |
| Geo Location | missing |
